Data Related Infomation

Camellia Sinesis var. sinensis cv. Huangdan                  GWHPAZTZ002052                   FAFU release 1 annotation

DNA Coding Sequence & Protein Sequence

Click here download sequences in FASTA format.

Gene Identification

Gene Product Name:   No Gene Product Found
Locus Name:   GWHPAZTZ002052

KEGG Orthology

K14292  K07442  K21888  

Gene Family

RrnaAD

Gene Attributes

Chromosome:GWHAZTZ00000001
Cds Coordinates:151032733-151032639
Nucleotide length:3060
Prodicted protein length:1019

Gene Ontology Classification

Database Annotation Match Start Match End GO
SMARTrADcneu6758926GO:0000154|GO:0000179|GO:0008649
TIGRFAMksgA: ribosomal RNA small subunit methyltransferase A744944GO:0000179|GO:0006364
PfamGlutathione S-transferase, N-terminal domain439508GO:0005515|GO:0006749
ProSiteProfilesSoluble glutathione S-transferase N-terminal domain profile.430508GO:0005515|GO:0006749
PANTHERGLUTATHIONE S-TRANSFERASE DHAR2-RELATED360606GO:0033355|GO:0045174|GO:0098869
ProSitePatternsRibosomal RNA adenine dimethylases signature.774801GO:0000154|GO:0000179|GO:0008649

Signal Peptide

No Signal Peptide Found

PFAM hits

Accession Name Match Start Match End E-value
PF00398.21429605Ribosomal RNA adenine dimethylase1e-5
PF00398.21429605Ribosomal RNA adenine dimethylase1e-5
PF13417.7429605Glutathione S-transferase, N-terminal domain1e-5
PF13417.7429605Glutathione S-transferase, N-terminal domain1e-5
PF13409.7429605Glutathione S-transferase, N-terminal domain1e-5
PF13409.7429605Glutathione S-transferase, N-terminal domain1e-5
PF13649.7429605Methyltransferase domain1e-5
PF13649.7429605Methyltransferase domain1e-5
PF08241.13429605Methyltransferase domain1e-5
PF08241.13429605Methyltransferase domain1e-5
PF02798.21429605Glutathione S-transferase, N-terminal domain1e-5
PF02798.21429605Glutathione S-transferase, N-terminal domain1e-5
PF13847.7429605Methyltransferase domain1e-5
PF13847.7429605Methyltransferase domain1e-5
PF06325.14429605Ribosomal protein L11 methyltransferase (PrmA)1e-5
PF06325.14429605Ribosomal protein L11 methyltransferase (PrmA)1e-5

Interpro hits

Interpro Accession Name Match Start Match End Annotation
IPR001737Pfam746947Ribosomal RNA adenine methyltransferase KsgA/Erm
IPR010987ProSiteProfiles486642Glutathione S-transferase, C-terminal-like
IPR001737ProSiteProfiles744998Ribosomal RNA adenine methyltransferase KsgA/Erm
IPR036282SUPERFAMILY503604Glutathione S-transferase, C-terminal domain superfamily
IPR020598SMART758926Ribosomal RNA adenine methylase transferase, N-terminal
IPR011530TIGRFAM744944Ribosomal RNA adenine dimethylase
IPR004045Pfam439508Glutathione S-transferase, N-terminal
IPR036249SUPERFAMILY439507Thioredoxin-like superfamily
IPR004045ProSiteProfiles430508Glutathione S-transferase, N-terminal
IPR029063SUPERFAMILY742947S-adenosyl-L-methionine-dependent methyltransferase
IPR044627PANTHER360606Dehydroascorbate reductases DHAR1/2/3/4
IPR020596ProSitePatterns774801Ribosomal RNA adenine methylase transferase, conserved site
IPR036249Gene3D422509Thioredoxin-like superfamily
IPR040079SFLD440604Glutathione Transferase family

Gene Structure

Blastn Searches(aligned nr database from NCBI)

Accession(nr database) %Identity Length E-value
XM_028216392.199.6358210.0