Data Related Infomation
Camellia Sinesis var. sinensis cv. Huangdan GWHPAZTZ005265 FAFU release 1 annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAZTZ005265 |
Gene Family
Chal_sti_synt_N
Gene Attributes
| Chromosome: | GWHAZTZ00000014 |
| Cds Coordinates: | 61179489-61179312 |
| Nucleotide length: | 1170 |
| Prodicted protein length: | 389 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| SUPERFAMILY | Thiolase-like | 235 | 386 | GO:0016746 |
| PIRSF | PKS_III | 2 | 389 | GO:0009058|GO:0016747 |
| SUPERFAMILY | Thiolase-like | 1 | 231 | GO:0016746 |
| Gene3D | - | 1 | 235 | GO:0016746 |
| ProSitePatterns | Chalcone and stilbene synthases active site. | 156 | 172 | GO:0009058|GO:0016746 |
| Gene3D | - | 236 | 389 | GO:0016746 |
| PANTHER | HYDROXYMETHYLGLUTARYL-COA SYNTHASE | 2 | 388 | GO:0009058|GO:0016747 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| PF00195.20 | 8 | 389 | Chalcone and stilbene synthases, N-terminal domain | 1e-5 |
| PF00195.20 | 8 | 389 | Chalcone and stilbene synthases, N-terminal domain | 1e-5 |
| PF02797.16 | 8 | 389 | Chalcone and stilbene synthases, C-terminal domain | 1e-5 |
| PF02797.16 | 8 | 389 | Chalcone and stilbene synthases, C-terminal domain | 1e-5 |
| PF08545.11 | 8 | 389 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III | 1e-5 |
| PF08545.11 | 8 | 389 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III | 1e-5 |
| PF08392.13 | 8 | 389 | FAE1/Type III polyketide synthase-like protein | 1e-5 |
| PF08392.13 | 8 | 389 | FAE1/Type III polyketide synthase-like protein | 1e-5 |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016039 | SUPERFAMILY | 235 | 386 | Thiolase-like |
| IPR011141 | PIRSF | 2 | 389 | Polyketide synthase, type III |
| IPR016039 | SUPERFAMILY | 1 | 231 | Thiolase-like |
| IPR001099 | Pfam | 5 | 227 | Chalcone/stilbene synthase, N-terminal |
| IPR012328 | Pfam | 238 | 387 | Chalcone/stilbene synthase, C-terminal |
| IPR016039 | Gene3D | 1 | 235 | Thiolase-like |
| IPR018088 | ProSitePatterns | 156 | 172 | Chalcone/stilbene synthase, active site |
| IPR016039 | Gene3D | 236 | 389 | Thiolase-like |
| IPR011141 | PANTHER | 2 | 388 | Polyketide synthase, type III |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028270488.1 | 94.786 | 1170 | 0.0 |