Data Related Infomation
Camellia Sinesis var. sinensis cv. Huangdan GWHPAZTZ020456 FAFU release 1 annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAZTZ020456 |
KEGG Orthology
Gene Family
Orn_Arg_deC_N
Gene Attributes
| Chromosome: | GWHAZTZ00000004 |
| Cds Coordinates: | 202949339-202948347 |
| Nucleotide length: | 993 |
| Prodicted protein length: | 296 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 58 | 76 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 201 | 214 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 82 | 94 | GO:0003824 |
| Pfam | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 51 | 287 | GO:0003824 |
| PANTHER | ARGININE DECARBOXYLASE | 1 | 290 | GO:0006527|GO:0008295|GO:0008792 |
| Gene3D | Lyase | 16 | 26 | GO:0003824 |
| PRINTS | Arginine decarboxylase signature | 26 | 41 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 134 | 155 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 158 | 180 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 50 | 64 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 108 | 123 | GO:0006527|GO:0008295|GO:0008792 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| PF02784.17 | 2 | 289 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 1e-5 |
| PF02784.17 | 2 | 289 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 1e-5 |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR000183 | PRINTS | 58 | 76 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 201 | 214 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 82 | 94 | Ornithine/DAP/Arg decarboxylase |
| IPR022644 | Pfam | 51 | 287 | Orn/DAP/Arg decarboxylase 2, N-terminal |
| IPR022657 | ProSitePatterns | 239 | 252 | Orn/DAP/Arg decarboxylase 2, conserved site |
| IPR029066 | Gene3D | 27 | 290 | PLP-binding barrel |
| IPR002985 | PANTHER | 1 | 290 | Arginine decarboxylase |
| IPR009006 | Gene3D | 16 | 26 | Alanine racemase/group IV decarboxylase, C-terminal |
| IPR002985 | PRINTS | 26 | 41 | Arginine decarboxylase |
| IPR002985 | PRINTS | 134 | 155 | Arginine decarboxylase |
| IPR002985 | PRINTS | 158 | 180 | Arginine decarboxylase |
| IPR002985 | PRINTS | 50 | 64 | Arginine decarboxylase |
| IPR002985 | PRINTS | 108 | 123 | Arginine decarboxylase |
| IPR029066 | SUPERFAMILY | 27 | 290 | PLP-binding barrel |
| IPR022653 | ProSitePatterns | 58 | 76 | Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| JQ653274.1 | 100 | 867 | 0.0 |