Data Related Infomation
Camellia Sinesis var. sinensis cv. Huangdan GWHPAZTZ024248 FAFU release 1 annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAZTZ024248 |
Gene Family
Epimerase
Gene Attributes
| Chromosome: | GWHAZTZ00000006 |
| Cds Coordinates: | 33126517-33126391 |
| Nucleotide length: | 1014 |
| Prodicted protein length: | 337 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Pfam | NAD dependent epimerase/dehydratase family | 12 | 257 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| PF01370.22 | 9 | 337 | NAD dependent epimerase/dehydratase family | 1e-5 |
| PF01370.22 | 9 | 337 | NAD dependent epimerase/dehydratase family | 1e-5 |
| PF01073.20 | 9 | 337 | 3-beta hydroxysteroid dehydrogenase/isomerase family | 1e-5 |
| PF01073.20 | 9 | 337 | 3-beta hydroxysteroid dehydrogenase/isomerase family | 1e-5 |
| PF13460.7 | 9 | 337 | NAD(P)H-binding | 1e-5 |
| PF13460.7 | 9 | 337 | NAD(P)H-binding | 1e-5 |
| PF07993.13 | 9 | 337 | Male sterility protein | 1e-5 |
| PF07993.13 | 9 | 337 | Male sterility protein | 1e-5 |
| PF16363.6 | 9 | 337 | GDP-mannose 4,6 dehydratase | 1e-5 |
| PF16363.6 | 9 | 337 | GDP-mannose 4,6 dehydratase | 1e-5 |
| PF05368.14 | 9 | 337 | NmrA-like family | 1e-5 |
| PF05368.14 | 9 | 337 | NmrA-like family | 1e-5 |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036291 | SUPERFAMILY | 8 | 330 | NAD(P)-binding domain superfamily |
| IPR001509 | Pfam | 12 | 257 | NAD-dependent epimerase/dehydratase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028199098.1 | 99.408 | 1014 | 0.0 |