Data Related Infomation
Camellia Sinesis var. sinensis cv. Huangdan GWHPAZTZ027825 FAFU release 1 annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAZTZ027825 |
KEGG Orthology
Gene Family
Orn_Arg_deC_N
Gene Attributes
| Chromosome: | GWHAZTZ00000007 |
| Cds Coordinates: | 72521821-72521267 |
| Nucleotide length: | 555 |
| Prodicted protein length: | 184 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 112 | 124 | GO:0003824 |
| PRINTS | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 88 | 106 | GO:0003824 |
| PRINTS | Arginine decarboxylase signature | 80 | 94 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 164 | 184 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 56 | 71 | GO:0006527|GO:0008295|GO:0008792 |
| PRINTS | Arginine decarboxylase signature | 138 | 153 | GO:0006527|GO:0008295|GO:0008792 |
| PANTHER | ARGININE DECARBOXYLASE | 14 | 171 | GO:0006527|GO:0008295|GO:0008792 |
| Pfam | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 81 | 171 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| PF02784.17 | 14 | 171 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 1e-5 |
| PF02784.17 | 14 | 171 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 1e-5 |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation/i> |
|---|---|---|---|---|
| IPR000183 | PRINTS | 112 | 124 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 88 | 106 | Ornithine/DAP/Arg decarboxylase |
| IPR022653 | ProSitePatterns | 88 | 106 | Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site |
| IPR002985 | PRINTS | 80 | 94 | Arginine decarboxylase |
| IPR002985 | PRINTS | 164 | 184 | Arginine decarboxylase |
| IPR002985 | PRINTS | 56 | 71 | Arginine decarboxylase |
| IPR002985 | PRINTS | 138 | 153 | Arginine decarboxylase |
| IPR002985 | PANTHER | 14 | 171 | Arginine decarboxylase |
| IPR022644 | Pfam | 81 | 171 | Orn/DAP/Arg decarboxylase 2, N-terminal |
| IPR029066 | Gene3D | 57 | 176 | PLP-binding barrel |
| IPR029066 | SUPERFAMILY | 57 | 172 | PLP-binding barrel |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028210843.1 | 98.198 | 555 | 0.0 |