Data Related Infomation
Camellia Sinesis var. sinensis cv. Huangdan GWHPAZTZ030916 FAFU release 1 annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPAZTZ030916 |
Gene Family
Lyase_aromatic
Gene Attributes
| Chromosome: | GWHAZTZ00000008 |
| Cds Coordinates: | 110552742-110552709 |
| Nucleotide length: | 5385 |
| Prodicted protein length: | 1794 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| SMART | c2hcfinal6 | 390 | 406 | GO:0003676|GO:0008270 |
| SMART | c2hcfinal6 | 618 | 634 | GO:0003676|GO:0008270 |
| Gene3D | - | 869 | 1056 | GO:0003676 |
| ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 1276 | 1292 | GO:0016841 |
| TIGRFAM | phe_am_lyase: phenylalanine ammonia-lyase | 1103 | 1784 | GO:0005737|GO:0006559|GO:0016841 |
| ProSiteProfiles | Integrase catalytic domain profile. | 873 | 1042 | GO:0015074 |
| ProSiteProfiles | Zinc finger CCHC-type profile. | 390 | 406 | GO:0003676|GO:0008270 |
| SUPERFAMILY | Retrovirus zinc finger-like domains | 385 | 411 | GO:0003676|GO:0008270 |
| Pfam | Integrase core domain | 875 | 979 | GO:0015074 |
| SUPERFAMILY | L-aspartase-like | 1103 | 1794 | GO:0003824 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| PF00221.20 | 1102 | 1794 | Aromatic amino acid lyase | 1e-5 |
| PF00221.20 | 1102 | 1794 | Aromatic amino acid lyase | 1e-5 |
| PF14223.7 | 1102 | 1794 | gag-polypeptide of LTR copia-type | 1e-5 |
| PF14223.7 | 1102 | 1794 | gag-polypeptide of LTR copia-type | 1e-5 |
| PF13976.7 | 1102 | 1794 | GAG-pre-integrase domain | 1e-5 |
| PF13976.7 | 1102 | 1794 | GAG-pre-integrase domain | 1e-5 |
| PF00665.27 | 1102 | 1794 | Integrase core domain | 1e-5 |
| PF00665.27 | 1102 | 1794 | Integrase core domain | 1e-5 |
| PF00650.21 | 1102 | 1794 | CRAL/TRIO domain | 1e-5 |
| PF00650.21 | 1102 | 1794 | CRAL/TRIO domain | 1e-5 |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001251 | Pfam | 12 | 74 | CRAL-TRIO lipid binding domain |
| IPR012337 | SUPERFAMILY | 876 | 1050 | Ribonuclease H-like superfamily |
| IPR001878 | SMART | 390 | 406 | Zinc finger, CCHC-type |
| IPR001878 | SMART | 618 | 634 | Zinc finger, CCHC-type |
| IPR023144 | Gene3D | 1607 | 1721 | Phenylalanine ammonia-lyase, shielding domain superfamily |
| IPR036397 | Gene3D | 869 | 1056 | Ribonuclease H superfamily |
| IPR022313 | ProSitePatterns | 1276 | 1292 | Phenylalanine/histidine ammonia-lyases, active site |
| IPR001106 | PANTHER | 1097 | 1794 | Aromatic amino acid lyase |
| IPR036865 | SUPERFAMILY | 15 | 99 | CRAL-TRIO lipid binding domain superfamily |
| IPR005922 | TIGRFAM | 1103 | 1784 | Phenylalanine ammonia-lyase |
| IPR025724 | Pfam | 804 | 861 | GAG-pre-integrase domain |
| IPR001106 | Pfam | 1141 | 1608 | Aromatic amino acid lyase |
| IPR036865 | Gene3D | 1 | 107 | CRAL-TRIO lipid binding domain superfamily |
| IPR001584 | ProSiteProfiles | 873 | 1042 | Integrase, catalytic core |
| IPR001878 | ProSiteProfiles | 390 | 406 | Zinc finger, CCHC-type |
| IPR024083 | Gene3D | 1102 | 1340 | Fumarase/histidase, N-terminal |
| IPR036875 | SUPERFAMILY | 385 | 411 | Zinc finger, CCHC-type superfamily |
| IPR001251 | ProSiteProfiles | 1 | 79 | CRAL-TRIO lipid binding domain |
| IPR001584 | Pfam | 875 | 979 | Integrase, catalytic core |
| IPR001251 | CDD | 15 | 73 | CRAL-TRIO lipid binding domain |
| IPR001106 | CDD | 1139 | 1604 | Aromatic amino acid lyase |
| IPR008948 | SUPERFAMILY | 1103 | 1794 | L-Aspartase-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028210520.1 | 99.769 | 2167 | 0.0 |