Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB000615 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB000615 |
KEGG Orthology
Gene Family
Chalcone,Chalcone_2
Gene Attributes
| Chromosome: | GWHACFB00000001 |
| Cds Coordinates: | 43119524-43142022 |
| Nucleotide length: | 22498 |
| Prodicted protein length: | 274 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR044191 | PANTHER | 64 | 274 | Chalcone--flavonone isomerase 3-like |
| IPR016088 | Gene3D | 85 | 249 | Chalcone isomerase, 3-layer sandwich |
| IPR036298 | SUPERFAMILY | 69 | 273 | Chalcone isomerase superfamily |
| IPR016087 | Pfam | 73 | 270 | Chalcone isomerase |
| IPR016089 | Gene3D | 117 | 270 | Chalcone isomerase, orthogonal bundle domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028214440 | 100 | 690 | 0.0 |
| KY615686 | 99.841 | 630 | 0.0 |
| MG720782 | 98.254 | 630 | 0.0 |
| MG720776 | 98.095 | 630 | 0.0 |
| MG720784 | 97.619 | 630 | 0.0 |
| MG720783 | 97.46 | 630 | 0.0 |
| MG720779 | 97.46 | 630 | 0.0 |
| MG720777 | 97.302 | 630 | 0.0 |
| MG720785 | 97.143 | 630 | 0.0 |
| MG720780 | 97.143 | 630 | 0.0 |
| MG720778 | 97.143 | 630 | 0.0 |
| MG720781 | 96.825 | 630 | 0.0 |
| XM_028270426 | 97.934 | 242 | 7.68e-113 |
| XM_028232603 | 98.077 | 156 | 2.27e-68 |