Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB001215 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB001215 |
Gene Family
Gln-synt_C,Gln-synt_N
Gene Attributes
| Chromosome: | GWHACFB00000001 |
| Cds Coordinates: | 126638807-126642461 |
| Nucleotide length: | 3654 |
| Prodicted protein length: | 356 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR027303 | ProSitePatterns | 237 | 253 | Glutamine synthetase, glycine-rich site |
| IPR008147 | Pfam | 23 | 97 | Glutamine synthetase, beta-Grasp domain |
| IPR027302 | ProSitePatterns | 55 | 72 | Glutamine synthetase, N-terminal conserved site |
| IPR036651 | Gene3D | 1 | 103 | Glutamine synthetase, N-terminal domain superfamily |
| IPR036651 | SUPERFAMILY | 15 | 102 | Glutamine synthetase, N-terminal domain superfamily |
| IPR008146 | SMART | 103 | 351 | Glutamine synthetase, catalytic domain |
| IPR008146 | Pfam | 148 | 254 | Glutamine synthetase, catalytic domain |
| IPR014746 | SUPERFAMILY | 104 | 353 | Glutamine synthetase/guanido kinase, catalytic domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| MG778703 | 99.907 | 1071 | 0.0 |
| JN226569 | 99.813 | 1071 | 0.0 |
| XM_028270852 | 99.72 | 1071 | 0.0 |
| KY649469 | 99.72 | 1071 | 0.0 |
| AB115183 | 99.533 | 1071 | 0.0 |
| JQ925873 | 99.44 | 1071 | 0.0 |
| JN602373 | 98.885 | 538 | 0.0 |
| XM_028250814 | 99.099 | 333 | 1.20e-166 |
| XM_028250814 | 98.98 | 196 | 3.72e-92 |
| XM_028204810 | 99.099 | 333 | 1.20e-166 |
| XM_028204810 | 98.98 | 196 | 3.72e-92 |
| XM_028212849 | 97.583 | 331 | 3.39e-157 |
| XM_028212849 | 97.238 | 181 | 8.17e-79 |
| AB085606 | 99.672 | 305 | 2.04e-154 |
| AB597268 | 95.588 | 68 | 2.47e-19 |
| AB597267 | 95.588 | 68 | 2.47e-19 |
| AB597266 | 95.588 | 68 | 2.47e-19 |
| AB597265 | 95.588 | 68 | 2.47e-19 |
| KF728397 | 100 | 67 | 8.83e-24 |