Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB002790 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB002790 |
Gene Family
GATase_2,Glu_synthase,Glu_syn_central,GXGXG
Gene Attributes
| Chromosome: | GWHACFB00000010 |
| Cds Coordinates: | 12550584-12626075 |
| Nucleotide length: | 75491 |
| Prodicted protein length: | 1630 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR002932 | Pfam | 915 | 1298 | Glutamate synthase domain |
| IPR002932 | CDD | 917 | 1311 | Glutamate synthase domain |
| IPR002489 | CDD | 1355 | 1605 | Glutamate synthase, alpha subunit, C-terminal |
| IPR029055 | SUPERFAMILY | 114 | 540 | Nucleophile aminohydrolases, N-terminal |
| IPR029055 | Gene3D | 114 | 651 | Nucleophile aminohydrolases, N-terminal |
| IPR013785 | Gene3D | 541 | 913 | Aldolase-type TIM barrel |
| IPR013785 | Gene3D | 589 | 1313 | Aldolase-type TIM barrel |
| IPR017932 | ProSiteProfiles | 114 | 513 | Glutamine amidotransferase type 2 domain |
| IPR002489 | Pfam | 1380 | 1561 | Glutamate synthase, alpha subunit, C-terminal |
| IPR006982 | Pfam | 563 | 855 | Glutamate synthase, central-N |
| IPR036485 | Gene3D | 1337 | 1611 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
| IPR017932 | Pfam | 114 | 536 | Glutamine amidotransferase type 2 domain |
| IPR036485 | SUPERFAMILY | 1353 | 1611 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028237347 | 99.875 | 3204 | 0.0 |
| XM_028201108 | 99.941 | 1695 | 0.0 |
| XM_028201109 | 99.931 | 1456 | 0.0 |
| XM_028201111 | 99.931 | 1455 | 0.0 |
| JN602371 | 99.673 | 611 | 0.0 |
| XM_028256661 | 95.95 | 321 | 1.26e-142 |
| XM_028256661 | 95.455 | 88 | 4.11e-28 |
| XR_003646180 | 95.95 | 321 | 1.26e-142 |
| XR_003646180 | 95.984 | 249 | 1.32e-107 |
| XM_028256664 | 97.674 | 86 | 2.46e-30 |
| XM_028208003 | 98.23 | 226 | 7.95e-105 |
| XM_028224998 | 97.345 | 226 | 1.72e-101 |
| XR_003646181 | 97.468 | 79 | 1.91e-26 |