Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB004286 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB004286 |
KEGG Orthology
Gene Family
Orn_Arg_deC_N
Gene Attributes
| Chromosome: | GWHACFB00000011 |
| Cds Coordinates: | 13406737-13407509 |
| Nucleotide length: | 772 |
| Prodicted protein length: | 227 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR022644 | Pfam | 81 | 171 | Orn/DAP/Arg decarboxylase 2, N-terminal |
| IPR002985 | PRINTS | 138 | 153 | Arginine decarboxylase |
| IPR002985 | PRINTS | 80 | 94 | Arginine decarboxylase |
| IPR002985 | PRINTS | 164 | 185 | Arginine decarboxylase |
| IPR002985 | PRINTS | 56 | 71 | Arginine decarboxylase |
| IPR022653 | ProSitePatterns | 88 | 106 | Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site |
| IPR000183 | PRINTS | 88 | 106 | Ornithine/DAP/Arg decarboxylase |
| IPR000183 | PRINTS | 112 | 124 | Ornithine/DAP/Arg decarboxylase |
| IPR029066 | Gene3D | 57 | 206 | PLP-binding barrel |
| IPR029066 | SUPERFAMILY | 57 | 172 | PLP-binding barrel |
| IPR002985 | PANTHER | 14 | 172 | Arginine decarboxylase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028210843 | 98.081 | 521 | 0.0 |
| XM_028210843 | 100 | 41 | 1.57e-09 |
| XM_028248840 | 98.298 | 470 | 0.0 |
| XM_028226418 | 100 | 167 | 1.42e-79 |
| XM_028223013 | 100 | 47 | 7.27e-13 |
| KC771292 | 100 | 47 | 7.27e-13 |
| KC008714 | 100 | 47 | 7.27e-13 |