Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB004378 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB004378 |
Gene Family
Epimerase,3Beta_HSD,NAD_binding_4,NAD_binding_10,GDP_Man_Dehyd,NmrA
Gene Attributes
| Chromosome: | GWHACFB00000011 |
| Cds Coordinates: | 27875774-28107201 |
| Nucleotide length: | 231427 |
| Prodicted protein length: | 918 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036291 | SUPERFAMILY | 599 | 911 | NAD(P)-binding domain superfamily |
| IPR036291 | SUPERFAMILY | 286 | 593 | NAD(P)-binding domain superfamily |
| IPR001509 | Pfam | 602 | 838 | NAD-dependent epimerase/dehydratase |
| IPR001509 | Pfam | 289 | 524 | NAD-dependent epimerase/dehydratase |
| IPR001509 | Pfam | 6 | 214 | NAD-dependent epimerase/dehydratase |
| IPR036291 | SUPERFAMILY | 69 | 279 | NAD(P)-binding domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028201957 | 99.489 | 978 | 0.0 |
| XM_028201957 | 97.366 | 949 | 0.0 |
| XM_028201956 | 99.489 | 978 | 0.0 |
| XM_028201956 | 97.366 | 949 | 0.0 |
| XM_028201955 | 99.579 | 949 | 0.0 |
| XM_028201955 | 97.546 | 978 | 0.0 |
| HM440158 | 99.368 | 950 | 0.0 |
| HM440158 | 97.035 | 978 | 0.0 |
| MK096704 | 99.038 | 936 | 0.0 |
| MK096704 | 96.698 | 969 | 0.0 |
| KR873394 | 98.528 | 951 | 0.0 |
| KR873394 | 96.527 | 979 | 0.0 |
| MK096705 | 98.932 | 936 | 0.0 |
| MK096705 | 96.594 | 969 | 0.0 |
| MK096706 | 98.825 | 936 | 0.0 |
| MK096706 | 96.388 | 969 | 0.0 |
| MK096708 | 98.718 | 936 | 0.0 |
| MK096708 | 96.388 | 969 | 0.0 |
| MK096707 | 98.718 | 936 | 0.0 |
| MK096707 | 96.285 | 969 | 0.0 |
| MK096709 | 98.504 | 936 | 0.0 |
| MK096709 | 96.182 | 969 | 0.0 |
| MK096710 | 98.397 | 936 | 0.0 |
| MK096710 | 96.078 | 969 | 0.0 |
| MK096713 | 98.291 | 936 | 0.0 |
| MK096713 | 95.975 | 969 | 0.0 |
| MK096711 | 98.291 | 936 | 0.0 |
| MK096711 | 95.975 | 969 | 0.0 |
| MK096714 | 98.184 | 936 | 0.0 |
| MK096714 | 95.872 | 969 | 0.0 |
| MK096712 | 98.184 | 936 | 0.0 |
| MK096712 | 95.769 | 969 | 0.0 |
| MK096715 | 98.077 | 936 | 0.0 |
| MK096715 | 95.769 | 969 | 0.0 |
| XM_028245728 | 98.744 | 637 | 0.0 |
| XM_028245726 | 97.488 | 637 | 0.0 |
| XM_028245727 | 99.099 | 444 | 0.0 |
| XM_028243258 | 98.87 | 354 | 3.12e-176 |