Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB004594 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB004594 |
Gene Family
Lyase_aromatic
Gene Attributes
| Chromosome: | GWHACFB00000011 |
| Cds Coordinates: | 50207957-50209722 |
| Nucleotide length: | 1765 |
| Prodicted protein length: | 381 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001106 | CDD | 2 | 377 | Aromatic amino acid lyase |
| IPR001106 | Pfam | 2 | 378 | Aromatic amino acid lyase |
| IPR008948 | SUPERFAMILY | 2 | 377 | L-Aspartase-like |
| IPR022313 | ProSitePatterns | 108 | 124 | Phenylalanine/histidine ammonia-lyases, active site |
| IPR024083 | Gene3D | 1 | 172 | Fumarase/histidase, N-terminal |
| IPR001106 | PANTHER | 2 | 378 | Aromatic amino acid lyase |
| IPR005922 | TIGRFAM | 2 | 378 | Phenylalanine ammonia-lyase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| MN207174 | 99.564 | 1147 | 0.0 |
| XM_028214819 | 99.564 | 1147 | 0.0 |
| KY615673 | 99.477 | 1147 | 0.0 |