Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB006209 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB006209 |
Gene Family
Exo70,Gln-synt_C
Gene Attributes
| Chromosome: | GWHACFB00000012 |
| Cds Coordinates: | 34636369-34637086 |
| Nucleotide length: | 717 |
| Prodicted protein length: | 230 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR014746 | SUPERFAMILY | 10 | 174 | Glutamine synthetase/guanido kinase, catalytic domain |
| IPR008146 | SMART | 1 | 159 | Glutamine synthetase, catalytic domain |
| IPR027303 | ProSitePatterns | 45 | 61 | Glutamine synthetase, glycine-rich site |
| IPR004140 | Pfam | 187 | 228 | Exocyst complex component Exo70 |
| IPR016159 | SUPERFAMILY | 188 | 228 | Cullin repeat-like-containing domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| MG778703 | 98.035 | 458 | 0.0 |
| JN226569 | 98.035 | 458 | 0.0 |
| XM_028270852 | 97.817 | 458 | 0.0 |
| KY649469 | 97.817 | 458 | 0.0 |
| JQ925873 | 97.598 | 458 | 0.0 |
| AB115183 | 97.38 | 458 | 0.0 |
| XM_028212849 | 95.028 | 181 | 2.43e-72 |
| XM_028201811 | 98.413 | 126 | 1.94e-53 |
| XM_028201810 | 98.413 | 126 | 1.94e-53 |
| XM_028201808 | 98.413 | 126 | 1.94e-53 |