Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB006297 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB006297 |
KEGG Orthology
K14467 K15395 K16093 K16121 K12240 K15663 K02364 K12442 K12427 K13611 K16119 K16416 K16430 K15664 K15659 K12701 K23667 K15658 K04792 K15660 K16099 K21792 K16095 K16391 K16432 K16129 K15675 K16378 K16130 K15384 K15018 K22148 K22739 K15654 K01904 K04784 K03822 K15662 K22118 K04788 K16122 K16124 K19103 K24101 K15666 K16120 K12239 K04789 K21059 K15656 K15655 K14469 K15653 K16375 K15668 K16123 K16131 K12743 K16228 K15394 K16126 K15667 K15670 K22152 K15665 K15661 K04780 K12421 K12444 K16428 K16229 K01043 K16094 K00155 K19102
Gene Family
AMP-binding
Gene Attributes
| Chromosome: | GWHACFB00000012 |
| Cds Coordinates: | 42325718-42331080 |
| Nucleotide length: | 5362 |
| Prodicted protein length: | 309 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR000873 | Pfam | 33 | 232 | AMP-dependent synthetase/ligase |
| IPR020845 | ProSitePatterns | 186 | 197 | AMP-binding, conserved site |
| IPR042099 | Gene3D | 1 | 243 | AMP-dependent synthetase-like superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KY615678 | 98.132 | 696 | 0.0 |
| XM_028251405 | 99.775 | 445 | 0.0 |
| XM_028215194 | 98.394 | 436 | 0.0 |
| XM_028215194 | 97.608 | 209 | 6.91e-94 |