Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB007999 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB007999 |
Gene Family
3Beta_HSD,Epimerase,GDP_Man_Dehyd,PP2C,NAD_binding_10,NmrA,Polysacc_synt_2,NAD_binding_4
Gene Attributes
| Chromosome: | GWHACFB00000013 |
| Cds Coordinates: | 86165552-86166718 |
| Nucleotide length: | 1166 |
| Prodicted protein length: | 332 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR001932 | CDD | 236 | 327 | PPM-type phosphatase domain |
| IPR001932 | Pfam | 242 | 320 | PPM-type phosphatase domain |
| IPR036291 | SUPERFAMILY | 45 | 289 | NAD(P)-binding domain superfamily |
| IPR036457 | Gene3D | 230 | 331 | PPM-type phosphatase domain superfamily |
| IPR001932 | ProSiteProfiles | 1 | 327 | PPM-type phosphatase domain |
| IPR002225 | Pfam | 50 | 210 | 3-beta hydroxysteroid dehydrogenase/isomerase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028256593 | 97.985 | 546 | 0.0 |
| XM_028256593 | 100 | 53 | 4.98e-16 |
| XR_003646172 | 97.985 | 546 | 0.0 |
| XR_003646172 | 100 | 53 | 4.98e-16 |
| XM_028246621 | 97.774 | 539 | 0.0 |
| FJ883579 | 97.258 | 547 | 0.0 |
| FJ883579 | 100 | 53 | 4.98e-16 |
| XM_028260815 | 97.279 | 441 | 0.0 |
| XM_028260815 | 100 | 53 | 4.98e-16 |
| XM_028198245 | 98.851 | 261 | 1.18e-126 |
| XM_028248044 | 97.115 | 104 | 2.24e-39 |
| XM_028215237 | 97.115 | 104 | 2.24e-39 |