Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB022597 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB022597 |
Gene Family
Epimerase,NAD_binding_4,3Beta_HSD,GDP_Man_Dehyd
Gene Attributes
| Chromosome: | GWHACFB00000007 |
| Cds Coordinates: | 145550045-145553486 |
| Nucleotide length: | 3441 |
| Prodicted protein length: | 227 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036291 | SUPERFAMILY | 8 | 226 | NAD(P)-binding domain superfamily |
| IPR001509 | Pfam | 44 | 195 | NAD-dependent epimerase/dehydratase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028199098 | 99.821 | 558 | 0.0 |
| XM_028199098 | 99.242 | 132 | 6.79e-58 |
| GU944768 | 99.821 | 558 | 0.0 |
| GU944768 | 99.242 | 132 | 6.79e-58 |
| MH236747 | 99.642 | 558 | 0.0 |
| MH236747 | 98.485 | 132 | 3.16e-56 |
| HM003282 | 99.283 | 558 | 0.0 |
| HM003282 | 98.485 | 132 | 3.16e-56 |
| KY615701 | 99.104 | 558 | 0.0 |
| KY615701 | 97.727 | 132 | 1.47e-54 |
| GU992400 | 99.104 | 558 | 0.0 |
| GU992400 | 97.727 | 132 | 1.47e-54 |
| AY641729 | 99.104 | 558 | 0.0 |
| AY641729 | 97.727 | 132 | 1.47e-54 |
| MG925481 | 98.566 | 558 | 0.0 |
| MG925481 | 96.97 | 132 | 6.83e-53 |