Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB022872 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB022872 |
KEGG Orthology
K18688 K15395 K24101 K04789 K15667 K05914 K15654 K04787 K16375 K05939 K14760 K15664 K21059 K15668 K15670 K04792 K16101 K14469 K16098 K15659 K16129 K16428 K16095 K22739 K04788 K03367 K02364 K12240 K14467 K15665 K12425 K21792 K15384 K16130 K16099 K00155 K12444 K16122 K16131 K16093 K16094 K18660 K16876 K16124 K19103 K16121 K10526 K01904 K01897 K15666 K04784 K16228 K01911 K22149 K12743 K15655 K01896 K04105 K16126 K23667 K12424 K15868 K04783 K20034 K01895 K02363 K12238 K23617 K12442 K01043 K16432 K03822 K15394 K15656 K04780 K22148 K12237 K15662 K18662 K12709 K16391 K22133 K15661 K08295 K12421 K00666 K16229 K23665 K18661 K12507 K02182 K04116 K18687 K22152 K18000 K16416 K19102 K16430 K15658 K15653 K15018 K12239 K13611 K15663 K15675 K16120 K16378 K16119 K12701 K22118 K12427 K16123 K15660
Gene Family
AMP-binding,AMP-binding_C
Gene Attributes
| Chromosome: | GWHACFB00000008 |
| Cds Coordinates: | 2442917-2449948 |
| Nucleotide length: | 7031 |
| Prodicted protein length: | 570 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR020845 | ProSitePatterns | 211 | 222 | AMP-binding, conserved site |
| IPR000873 | Pfam | 53 | 467 | AMP-dependent synthetase/ligase |
| IPR042099 | Gene3D | 23 | 461 | AMP-dependent synthetase-like superfamily |
| IPR025110 | Pfam | 476 | 551 | AMP-binding enzyme, C-terminal domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028196719 | 99.883 | 1713 | 0.0 |
| KY615679 | 99.591 | 1713 | 0.0 |
| DQ194356 | 98.312 | 1718 | 0.0 |
| XR_003645807 | 100 | 181 | 6.07e-87 |