Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB022984 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB022984 |
Gene Family
GATase_2,Glu_synthase,Glu_syn_central,GXGXG,Pyr_redox_2,Fer4_20,NAD_binding_8,Pyr_redox_3,Pyr_redox,FAD_oxidored
Gene Attributes
| Chromosome: | GWHACFB00000008 |
| Cds Coordinates: | 7700420-7719926 |
| Nucleotide length: | 19506 |
| Prodicted protein length: | 2386 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR029055 | Gene3D | 108 | 547 | Nucleophile aminohydrolases, N-terminal |
| IPR036485 | Gene3D | 1365 | 1637 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
| IPR002932 | Pfam | 940 | 1309 | Glutamate synthase domain |
| IPR002489 | Pfam | 1392 | 1578 | Glutamate synthase, alpha subunit, C-terminal |
| IPR017932 | ProSiteProfiles | 108 | 512 | Glutamine amidotransferase type 2 domain |
| IPR002932 | CDD | 942 | 1323 | Glutamate synthase domain |
| IPR023753 | Pfam | 1839 | 2165 | FAD/NAD(P)-binding domain |
| IPR006982 | Pfam | 585 | 873 | Glutamate synthase, central-N |
| IPR028261 | Pfam | 1715 | 1826 | Dihydroprymidine dehydrogenase domain II |
| IPR006005 | TIGRFAM | 1694 | 2178 | Glutamate synthase, NADH/NADPH, small subunit 1 |
| IPR002489 | CDD | 1369 | 1618 | Glutamate synthase, alpha subunit, C-terminal |
| IPR036485 | SUPERFAMILY | 1361 | 1625 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
| IPR029055 | SUPERFAMILY | 108 | 538 | Nucleophile aminohydrolases, N-terminal |
| IPR009051 | SUPERFAMILY | 1693 | 1849 | Alpha-helical ferredoxin |
| IPR017932 | Pfam | 108 | 535 | Glutamine amidotransferase type 2 domain |
| IPR013785 | Gene3D | 561 | 921 | Aldolase-type TIM barrel |
| IPR009051 | Gene3D | 1701 | 1836 | Alpha-helical ferredoxin |
| IPR013785 | Gene3D | 922 | 1362 | Aldolase-type TIM barrel |
| IPR036188 | Gene3D | 1949 | 2109 | FAD/NAD(P)-binding domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028228546 | 99.531 | 6605 | 0.0 |
| XM_028228545 | 99.395 | 6614 | 0.0 |
| XM_028228548 | 99.329 | 5659 | 0.0 |
| XM_028228549 | 99.328 | 5658 | 0.0 |
| XM_028228547 | 99.328 | 5658 | 0.0 |
| XM_028228547 | 100 | 59 | 1.70e-18 |
| XM_028254675 | 96.777 | 3320 | 0.0 |
| XM_028254674 | 96.515 | 3329 | 0.0 |
| MH981232 | 98.887 | 629 | 0.0 |