Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB023423 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB023423 |
Gene Family
Lyase_aromatic,Cu-oxidase_3,RNA_pol_Rpb2_1,Calreticulin,E1-E2_ATPase
Gene Attributes
| Chromosome: | GWHACFB00000008 |
| Cds Coordinates: | 51061498-51089524 |
| Nucleotide length: | 28026 |
| Prodicted protein length: | 1153 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR023144 | Gene3D | 966 | 1080 | Phenylalanine ammonia-lyase, shielding domain superfamily |
| IPR009033 | SUPERFAMILY | 258 | 306 | Calreticulin/calnexin, P domain superfamily |
| IPR036465 | Gene3D | 308 | 365 | von Willebrand factor A-like domain superfamily |
| IPR001580 | PRINTS | 271 | 290 | Calreticulin/calnexin |
| IPR001580 | PRINTS | 304 | 324 | Calreticulin/calnexin |
| IPR008250 | SUPERFAMILY | 374 | 403 | P-type ATPase, A domain superfamily |
| IPR001580 | Pfam | 259 | 316 | Calreticulin/calnexin |
| IPR001106 | PANTHER | 457 | 1153 | Aromatic amino acid lyase |
| IPR007644 | Pfam | 224 | 292 | RNA polymerase, beta subunit, protrusion |
| IPR022313 | ProSitePatterns | 635 | 651 | Phenylalanine/histidine ammonia-lyases, active site |
| IPR008972 | Gene3D | 33 | 181 | Cupredoxin |
| IPR001106 | Pfam | 499 | 975 | Aromatic amino acid lyase |
| IPR008972 | SUPERFAMILY | 118 | 206 | Cupredoxin |
| IPR001106 | CDD | 497 | 963 | Aromatic amino acid lyase |
| IPR011707 | Pfam | 118 | 180 | Multicopper oxidase, type 3 |
| IPR005922 | TIGRFAM | 461 | 1143 | Phenylalanine ammonia-lyase |
| IPR009033 | Gene3D | 236 | 297 | Calreticulin/calnexin, P domain superfamily |
| IPR024083 | Gene3D | 460 | 699 | Fumarase/histidase, N-terminal |
| IPR008948 | SUPERFAMILY | 461 | 1153 | L-Aspartase-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| MN207177 | 99.621 | 2109 | 0.0 |
| XM_028202856 | 99.621 | 2109 | 0.0 |
| KY865305 | 99.526 | 2109 | 0.0 |
| KY615672 | 99.289 | 2109 | 0.0 |
| XM_028246604 | 100 | 253 | 1.17e-126 |
| XM_028238934 | 98.864 | 176 | 1.62e-80 |
| XM_028199262 | 98.286 | 175 | 2.70e-78 |
| XM_028199262 | 100 | 98 | 1.71e-40 |
| XM_028199261 | 98.286 | 175 | 2.70e-78 |
| XM_028199261 | 100 | 98 | 1.71e-40 |
| XM_028199261 | 96.341 | 82 | 1.35e-26 |
| XM_028255115 | 95.266 | 169 | 1.28e-66 |
| XM_028255114 | 95.266 | 169 | 1.28e-66 |
| XM_028255113 | 95.266 | 169 | 1.28e-66 |
| XM_028257710 | 96 | 75 | 1.05e-22 |
| XR_003642756 | 100 | 98 | 1.71e-40 |
| XR_003637290 | 100 | 98 | 1.71e-40 |
| XR_003637289 | 100 | 98 | 1.71e-40 |
| XR_003637289 | 98.734 | 79 | 2.90e-28 |
| XM_028223673 | 100 | 98 | 1.71e-40 |
| XM_028223673 | 98.75 | 80 | 8.07e-29 |
| XM_028214622 | 100 | 98 | 1.71e-40 |
| XM_028214622 | 98.75 | 80 | 8.07e-29 |
| XM_028196308 | 98.077 | 104 | 1.71e-40 |
| XM_028196306 | 98.077 | 104 | 1.71e-40 |
| XR_003630364 | 98.98 | 98 | 7.95e-39 |
| XR_003637291 | 98.75 | 80 | 8.07e-29 |
| XR_003637291 | 98.246 | 57 | 4.92e-16 |
| XR_003637288 | 98.734 | 79 | 2.90e-28 |
| XR_003637288 | 98.246 | 57 | 4.92e-16 |
| XR_003637287 | 98.734 | 79 | 2.90e-28 |
| XR_003637287 | 98.246 | 57 | 4.92e-16 |
| XR_003637286 | 98.734 | 79 | 2.90e-28 |
| XR_003637286 | 98.246 | 57 | 4.92e-16 |
| XR_003637285 | 98.734 | 79 | 2.90e-28 |
| XR_003637285 | 98.246 | 57 | 4.92e-16 |
| XR_003637284 | 98.734 | 79 | 2.90e-28 |
| XR_003637284 | 98.246 | 57 | 4.92e-16 |
| XR_003637283 | 98.734 | 79 | 2.90e-28 |
| XR_003637283 | 98.246 | 57 | 4.92e-16 |
| XR_003637282 | 98.734 | 79 | 2.90e-28 |
| XR_003637282 | 98.246 | 57 | 4.92e-16 |
| XR_003637281 | 98.734 | 79 | 2.90e-28 |
| XR_003637281 | 98.246 | 57 | 4.92e-16 |
| XR_003637280 | 98.734 | 79 | 2.90e-28 |
| XR_003637280 | 98.246 | 57 | 4.92e-16 |
| XM_028228639 | 98.734 | 79 | 2.90e-28 |
| XM_028228639 | 98.246 | 57 | 4.92e-16 |
| XM_028228638 | 98.734 | 79 | 2.90e-28 |
| XM_028228638 | 98.246 | 57 | 4.92e-16 |
| XM_028228637 | 98.734 | 79 | 2.90e-28 |
| XM_028228637 | 98.246 | 57 | 4.92e-16 |
| XM_028249526 | 97.5 | 80 | 3.75e-27 |
| XM_028249526 | 98.246 | 57 | 4.92e-16 |
| XM_028249525 | 97.5 | 80 | 3.75e-27 |
| XM_028249525 | 98.246 | 57 | 4.92e-16 |
| XM_033286735 | 98.113 | 53 | 8.24e-14 |
| XM_033286734 | 98.113 | 53 | 8.24e-14 |
| XR_003636769 | 100 | 50 | 8.24e-14 |
| LR031877 | 96.429 | 56 | 8.24e-14 |
| LR031572 | 98.113 | 53 | 8.24e-14 |
| XM_013839350 | 98.113 | 53 | 8.24e-14 |
| XM_013783143 | 98.113 | 53 | 8.24e-14 |
| XM_034350917 | 96.226 | 53 | 3.83e-12 |
| XM_034350916 | 96.226 | 53 | 3.83e-12 |
| XR_004584846 | 96.226 | 53 | 3.83e-12 |
| XM_034350915 | 96.226 | 53 | 3.83e-12 |
| XM_034350914 | 96.226 | 53 | 3.83e-12 |
| XM_034350912 | 96.226 | 53 | 3.83e-12 |
| XM_009147263 | 96.226 | 53 | 3.83e-12 |
| XM_031115686 | 96.226 | 53 | 3.83e-12 |
| XM_031115685 | 96.226 | 53 | 3.83e-12 |
| XM_024056990 | 96.226 | 53 | 3.83e-12 |
| XM_013862664 | 96.226 | 53 | 3.83e-12 |
| XM_022719549 | 96.226 | 53 | 3.83e-12 |
| XM_020559438 | 96.226 | 53 | 3.83e-12 |
| XM_020559437 | 96.226 | 53 | 3.83e-12 |
| XM_020559436 | 96.226 | 53 | 3.83e-12 |
| XM_020559435 | 96.226 | 53 | 3.83e-12 |