Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB026038 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB026038 |
KEGG Orthology
Gene Family
Chal_sti_synt_N,Chal_sti_synt_C,ACP_syn_III
Gene Attributes
| Chromosome: | GWHACFB00000009 |
| Cds Coordinates: | 120767922-120769456 |
| Nucleotide length: | 1534 |
| Prodicted protein length: | 389 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016039 | Gene3D | 1 | 235 | Thiolase-like |
| IPR016039 | Gene3D | 236 | 388 | Thiolase-like |
| IPR011141 | PIRSF | 2 | 388 | Polyketide synthase, type III |
| IPR011141 | PANTHER | 2 | 388 | Polyketide synthase, type III |
| IPR018088 | ProSitePatterns | 156 | 172 | Chalcone/stilbene synthase, active site |
| IPR016039 | SUPERFAMILY | 1 | 232 | Thiolase-like |
| IPR001099 | Pfam | 5 | 228 | Chalcone/stilbene synthase, N-terminal |
| IPR016039 | SUPERFAMILY | 235 | 386 | Thiolase-like |
| IPR012328 | Pfam | 238 | 387 | Chalcone/stilbene synthase, C-terminal |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028211685 | 96.24 | 1117 | 0.0 |
| KC357706 | 95.722 | 187 | 4.16e-77 |
| AY146709 | 97.938 | 776 | 0.0 |
| AY146701 | 97.809 | 776 | 0.0 |