Data Related Infomation
Camellia sinensis var. sinensis cv. Longjing43 GWHPACFB027362 TRI CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | GWHPACFB027362 |
KEGG Orthology
Gene Family
Chalcone
Gene Attributes
| Chromosome: | GWHACFB00001670 |
| Cds Coordinates: | 21791-31640 |
| Nucleotide length: | 9849 |
| Prodicted protein length: | 163 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
SP(Sec/SPI)
CS pos:22-23.
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016088 | Gene3D | 61 | 163 | Chalcone isomerase, 3-layer sandwich |
| IPR016089 | Gene3D | 105 | 133 | Chalcone isomerase, orthogonal bundle domain superfamily |
| IPR036298 | SUPERFAMILY | 60 | 163 | Chalcone isomerase superfamily |
| IPR016087 | Pfam | 61 | 163 | Chalcone isomerase |
| IPR044164 | PANTHER | 61 | 163 | Chalcone--flavonone isomerase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028263816 | 99.674 | 307 | 6.97e-156 |
| XM_028263815 | 99.674 | 307 | 6.97e-156 |