Data Related Infomation
Camellia sinensis var. assamica cv. Yunkang10 CSA003654.1 KIB CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSA003654.1 |
Gene Family
Glu_synthase,Glu_syn_central,GXGXG
Gene Attributes
| Chromosome: | Sc0000011 |
| Cds Coordinates: | 1769079-1787858 |
| Nucleotide length: | 18779 |
| Prodicted protein length: | 1070 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR013785 | Gene3D | 340 | 791 | Aldolase-type TIM barrel |
| IPR013785 | Gene3D | 1 | 339 | Aldolase-type TIM barrel |
| IPR002932 | Pfam | 354 | 737 | Glutamate synthase domain |
| IPR002489 | Pfam | 819 | 1000 | Glutamate synthase, alpha subunit, C-terminal |
| IPR006982 | Pfam | 4 | 294 | Glutamate synthase, central-N |
| IPR002489 | CDD | 794 | 1044 | Glutamate synthase, alpha subunit, C-terminal |
| IPR002932 | CDD | 356 | 750 | Glutamate synthase domain |
| IPR036485 | Gene3D | 792 | 1067 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
| IPR036485 | SUPERFAMILY | 792 | 1050 | Glutamate synthase, alpha subunit, C-terminal domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028237347 | 99.844 | 3202 | 0.0 |
| JN602371 | 99.673 | 611 | 0.0 |
| XM_028256661 | 95.639 | 321 | 3.82e-141 |
| XM_028256661 | 95.455 | 88 | 2.69e-28 |
| XR_003646180 | 95.639 | 321 | 3.82e-141 |
| XR_003646180 | 95.984 | 249 | 8.63e-108 |
| XM_028256664 | 97.674 | 86 | 1.61e-30 |
| XM_028208003 | 98.23 | 226 | 5.19e-105 |
| XM_028224998 | 97.345 | 226 | 1.12e-101 |
| XR_003646181 | 97.468 | 79 | 1.25e-26 |