Data Related Infomation
Camellia sinensis var. assamica cv. Yunkang10 CSA006623.1 KIB CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSA006623.1 |
KEGG Orthology
Gene Family
Chalcone
Gene Attributes
| Chromosome: | Sc0002556 |
| Cds Coordinates: | 127806-147398 |
| Nucleotide length: | 19592 |
| Prodicted protein length: | 631 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR036298 | SUPERFAMILY | 147 | 242 | Chalcone isomerase superfamily |
| IPR016088 | Gene3D | 133 | 213 | Chalcone isomerase, 3-layer sandwich |
| IPR044164 | PANTHER | 143 | 243 | Chalcone--flavonone isomerase |
| IPR016087 | Pfam | 153 | 244 | Chalcone isomerase |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| HQ269805 | 98.083 | 313 | 2.85e-150 |
| XM_028236419 | 97.125 | 313 | 2.87e-145 |
| KY615684 | 97.705 | 305 | 3.72e-144 |
| DQ120521 | 96.721 | 305 | 3.74e-139 |
| XM_028208665 | 98.524 | 271 | 2.93e-130 |
| XM_028208665 | 100 | 78 | 1.22e-29 |
| XM_028208664 | 98.519 | 270 | 1.06e-129 |
| XM_028208664 | 100 | 223 | 3.02e-110 |
| XM_028208663 | 98.519 | 270 | 1.06e-129 |
| XM_028208663 | 100 | 222 | 1.09e-109 |
| XM_028208669 | 95.045 | 222 | 2.40e-91 |
| XM_028208666 | 95.862 | 145 | 7.01e-57 |
| XM_028208671 | 95.862 | 145 | 7.01e-57 |
| XM_028208670 | 95.862 | 145 | 7.01e-57 |
| XM_028208668 | 95.862 | 145 | 7.01e-57 |
| XM_028208667 | 95.862 | 145 | 7.01e-57 |
| XM_028211274 | 97.531 | 81 | 5.66e-28 |
| XM_028248317 | 100 | 60 | 1.23e-19 |
| XM_028249483 | 96.825 | 63 | 5.74e-18 |
| XR_003636414 | 96.667 | 60 | 2.67e-16 |
| XM_028209952 | 96.667 | 60 | 2.67e-16 |
| XM_028270276 | 95.238 | 63 | 2.67e-16 |
| XM_028252139 | 96.667 | 60 | 2.67e-16 |
| XM_028241751 | 98.182 | 55 | 3.45e-15 |
| XM_028197997 | 96.61 | 59 | 3.45e-15 |
| XM_028254823 | 98.182 | 55 | 3.45e-15 |
| XM_028229920 | 98.148 | 54 | 1.24e-14 |
| XM_028251340 | 96.552 | 58 | 1.24e-14 |
| XM_028203313 | 95.082 | 61 | 1.24e-14 |
| XM_028218862 | 96.364 | 55 | 1.61e-13 |
| XM_028262311 | 96.364 | 55 | 1.61e-13 |
| XM_028233525 | 95.556 | 45 | 5.82e-08 |
| XM_028212364 | 97.561 | 41 | 2.09e-07 |