Data Related Infomation
Camellia sinensis var. assamica cv. Yunkang10 CSA008261.1 KIB CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSA008261.1 |
KEGG Orthology
Gene Family
Chalcone
Gene Attributes
| Chromosome: | Sc0000881 |
| Cds Coordinates: | 195984-196737 |
| Nucleotide length: | 753 |
| Prodicted protein length: | 123 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR016087 | Pfam | 14 | 92 | Chalcone isomerase |
| IPR016089 | Gene3D | 62 | 90 | Chalcone isomerase, orthogonal bundle domain superfamily |
| IPR044164 | PANTHER | 6 | 91 | Chalcone--flavonone isomerase |
| IPR036298 | SUPERFAMILY | 8 | 95 | Chalcone isomerase superfamily |
| IPR016088 | Gene3D | 14 | 92 | Chalcone isomerase, 3-layer sandwich |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| HQ269805 | 99.631 | 271 | 5.26e-136 |
| KY615684 | 99.262 | 271 | 2.45e-134 |
| XM_028236419 | 98.524 | 271 | 5.30e-131 |
| DQ120521 | 98.155 | 271 | 2.46e-129 |