Data Related Infomation
Camellia sinensis var. assamica cv. Yunkang10 CSA008262.1 KIB CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSA008262.1 |
KEGG Orthology
Gene Family
Chalcone
Gene Attributes
| Chromosome: | Sc0000881 |
| Cds Coordinates: | 213132-215062 |
| Nucleotide length: | 1930 |
| Prodicted protein length: | 145 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR044164 | PANTHER | 6 | 136 | Chalcone--flavonone isomerase |
| IPR036298 | SUPERFAMILY | 6 | 132 | Chalcone isomerase superfamily |
| IPR016087 | Pfam | 6 | 130 | Chalcone isomerase |
| IPR016088 | Gene3D | 2 | 107 | Chalcone isomerase, 3-layer sandwich |
| IPR016089 | Gene3D | 108 | 133 | Chalcone isomerase, orthogonal bundle domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KY615684 | 99.526 | 422 | 0.0 |
| DQ120521 | 99.289 | 422 | 0.0 |
| XM_028236419 | 99.52 | 417 | 0.0 |
| HQ269805 | 98.104 | 422 | 0.0 |
| XM_028263815 | 95.652 | 414 | 0.0 |
| XM_028263816 | 95.833 | 120 | 2.56e-45 |