Data Related Infomation
Camellia sinensis var. assamica cv. Yunkang10 CSA014052.1 KIB CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSA014052.1 |
Gene Family
Gln-synt_C,Gln-synt_N
Gene Attributes
| Chromosome: | Sc0000650 |
| Cds Coordinates: | 554951-561160 |
| Nucleotide length: | 6209 |
| Prodicted protein length: | 423 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR008146 | SMART | 103 | 417 | Glutamine synthetase, catalytic domain |
| IPR014746 | SUPERFAMILY | 307 | 418 | Glutamine synthetase/guanido kinase, catalytic domain |
| IPR008147 | Pfam | 22 | 97 | Glutamine synthetase, beta-Grasp domain |
| IPR014746 | SUPERFAMILY | 104 | 307 | Glutamine synthetase/guanido kinase, catalytic domain |
| IPR027303 | ProSitePatterns | 237 | 253 | Glutamine synthetase, glycine-rich site |
| IPR036651 | SUPERFAMILY | 12 | 102 | Glutamine synthetase, N-terminal domain superfamily |
| IPR008146 | Pfam | 168 | 254 | Glutamine synthetase, catalytic domain |
| IPR027302 | ProSitePatterns | 55 | 72 | Glutamine synthetase, N-terminal conserved site |
| IPR036651 | Gene3D | 1 | 103 | Glutamine synthetase, N-terminal domain superfamily |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028206914 | 99.457 | 920 | 0.0 |
| XM_028206914 | 98.864 | 352 | 1.83e-175 |
| KY649471 | 99.457 | 920 | 0.0 |
| KY649471 | 98.58 | 352 | 8.51e-174 |
| AB117934 | 99.348 | 920 | 0.0 |
| AB117934 | 98.864 | 352 | 1.83e-175 |
| MG778704 | 99.022 | 920 | 0.0 |
| MG778704 | 98.58 | 352 | 8.51e-174 |
| KJ650042 | 98.587 | 920 | 0.0 |
| KJ650042 | 98.011 | 352 | 1.84e-170 |
| AB597263 | 96.25 | 160 | 2.14e-65 |
| AB597263 | 100 | 73 | 4.86e-27 |
| AB597263 | 98.63 | 73 | 2.26e-25 |
| AB597262 | 95.625 | 160 | 9.94e-64 |
| AB597262 | 100 | 73 | 4.86e-27 |
| AB597262 | 98.63 | 73 | 2.26e-25 |
| XR_003641349 | 99.123 | 114 | 3.65e-48 |
| CP039349 | 100 | 35 | 6.47e-06 |
| AP019299 | 95.122 | 41 | 6.47e-06 |