Data Related Infomation
Camellia sinensis var. assamica cv. Yunkang10 CSA023959.1 KIB CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSA023959.1 |
Gene Family
ELFV_dehydrog,ELFV_dehydrog_N
Gene Attributes
| Chromosome: | xpSc0054593 |
| Cds Coordinates: | 39847-48140 |
| Nucleotide length: | 8293 |
| Prodicted protein length: | 414 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR033922 | CDD | 178 | 404 | NAD(P) binding domain of glutamate dehydrogenase |
| IPR014362 | PIRSF | 1 | 413 | Glutamate dehydrogenase |
| IPR006096 | SMART | 180 | 410 | Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal |
| IPR006097 | Pfam | 35 | 161 | Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain |
| IPR036291 | SUPERFAMILY | 178 | 411 | NAD(P)-binding domain superfamily |
| IPR006095 | PRINTS | 169 | 191 | Glutamate/phenylalanine/leucine/valine dehydrogenase |
| IPR006095 | PRINTS | 211 | 231 | Glutamate/phenylalanine/leucine/valine dehydrogenase |
| IPR006095 | PRINTS | 90 | 104 | Glutamate/phenylalanine/leucine/valine dehydrogenase |
| IPR006095 | PRINTS | 338 | 349 | Glutamate/phenylalanine/leucine/valine dehydrogenase |
| IPR006096 | Pfam | 178 | 410 | Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| XM_028247449 | 99.678 | 1242 | 0.0 |
| EU715396 | 99.11 | 1236 | 0.0 |
| XM_028247393 | 99.803 | 1014 | 0.0 |
| XM_028247393 | 99.123 | 228 | 7.05e-110 |
| JN602372 | 100 | 347 | 2.30e-179 |