Data Related Infomation
Camellia sinensis var. assamica cv. Yunkang10 CSA029773.1 KIB CSS Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | No Gene Product Found |
| Locus Name: | CSA029773.1 |
KEGG Orthology
Gene Family
Chal_sti_synt_N,Chal_sti_synt_C,ACP_syn_III_C,ACP_syn_III,FAE1_CUT1_RppA
Gene Attributes
| Chromosome: | Sc0000002 |
| Cds Coordinates: | 294330-295241 |
| Nucleotide length: | 911 |
| Prodicted protein length: | 304 |
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Name | Match Start | Match End | E-value |
|---|---|---|---|---|
| Null | Null | Null | Null | Null |
Interpro hits
| Interpro Accession | Name | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR012328 | Pfam | 152 | 301 | Chalcone/stilbene synthase, C-terminal |
| IPR018088 | ProSitePatterns | 70 | 86 | Chalcone/stilbene synthase, active site |
| IPR016039 | Gene3D | 1 | 149 | Thiolase-like |
| IPR016039 | Gene3D | 150 | 302 | Thiolase-like |
| IPR016039 | SUPERFAMILY | 1 | 147 | Thiolase-like |
| IPR001099 | Pfam | 1 | 142 | Chalcone/stilbene synthase, N-terminal |
| IPR011141 | PANTHER | 1 | 301 | Polyketide synthase, type III |
| IPR016039 | SUPERFAMILY | 149 | 300 | Thiolase-like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| KY615683 | 99.232 | 912 | 0.0 |
| D26595 | 99.232 | 912 | 0.0 |
| KC357706 | 99.232 | 911 | 0.0 |
| AY656677 | 99.123 | 912 | 0.0 |
| KC357709 | 99.122 | 911 | 0.0 |
| XM_028211684 | 99.013 | 912 | 0.0 |
| XM_028211685 | 98.355 | 912 | 0.0 |
| JN944575 | 98.026 | 912 | 0.0 |
| MG720794 | 96.605 | 913 | 0.0 |
| AY146702 | 98.454 | 776 | 0.0 |
| AY146710 | 98.325 | 776 | 0.0 |
| AY146705 | 97.938 | 776 | 0.0 |
| AY146697 | 97.815 | 778 | 0.0 |
| AY146701 | 95.49 | 776 | 0.0 |
| AY570927 | 96.421 | 503 | 0.0 |