Data Related Infomation

Camellia sinensis var. sinensis cv. Tieguanyin                  GWHPASIV001008                   FAFU Release 1 Annotation

DNA Coding Sequence & Protein Sequence

Click here download sequences in FASTA format.

Gene Identification

Gene Product Name:   Leucine-rich repeat
Locus Name:   GWHPASIV001008

KEGG Orthology

K13466  K13420  K13465  K13468  K13470  K13446  K13471  K13428  K13416  K08844  K13437  K12796  K16340  K13415  K20718  K19613  K08399  K13459  K16224  K04306  K24055  K13457  K04308  K10159  K17256  K20599  K06839  K18809  K13418  K13023  K23533  K08462  K04309  K05401  K14142  K18807  K17550  K06838  K06555  K20359  K08843  K10130  K18808  K08120  K06260  K13460  K06850  K10348  K22615  K13417  K24492  K08460  K22038  K16351  K08123  K16665  K08118  K12800  K08461  K04307  K10641  K24500  K10168  K10160  K00924  K08119  K04391  K16362  K16360  K20230  K20237  K06261  K08121  K04247  K10169  K16355  K15069  K22529  K24491  K16661  K10268  K08124  K10350  K16357  K20865  K08128  K08125  K24493  K23946  K16354  K16356  K16358  K08130  K04985  K10171  K14050  K16717  K10280  K16606  K17576  K24095  K22449  K10278  K08127  K16666  K16659  K20493  K12807  K15353  K10275  K10270  K17579  K17568  K14319  K23831  K18647  K12805  K19750  K13453  K16660  K16532  K10273  K18648  K17567  K16765  K15082  K04360  K23830  

Gene Family

LRR_8

Gene Attributes

No Gene Attributes Found

Gene Ontology Classification

Database Annotation Match Start Match End GO
PfamLeucine-rich repeat118132GO:0005515
PfamLeucine-rich repeat735756GO:0005515
PfamLeucine-rich repeat897915GO:0005515
PfamLeucine-rich repeat687707GO:0005515
PfamLeucine-rich repeat344403GO:0005515
PfamLeucine-rich repeat759818GO:0005515
PfamLeucine-rich repeat493553GO:0005515

Signal Peptide

No Signal Peptide Found

PFAM hits

Accession Annotation Match Start Match End E-value
PF13516Leucine Rich repeat1181321e-5
PF00560Leucine Rich Repeat7357561e-5
PF00560Leucine Rich Repeat8979151e-5
PF00560Leucine Rich Repeat6877071e-5
PF13855Leucine rich repeat3444031e-5
PF13855Leucine rich repeat7598181e-5
PF13855Leucine rich repeat4935531e-5
PF08263Leucine rich repeat N-terminal domain37741e-5

Interpro hits

Interpro Accession Database Match Start Match End Annotation
-PANTHER336507LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
-PANTHER32335LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
-PANTHER4941045LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
-SUPERFAMILY639974L domain-like
IPR001611Pfam118132Leucine Rich repeat
-Coils3656Coil
IPR001611Pfam735756Leucine Rich Repeat
IPR001611Pfam897915Leucine Rich Repeat
IPR001611Pfam687707Leucine Rich Repeat
IPR003591SMART390414LRR_typ_2
IPR003591SMART805828LRR_typ_2
IPR003591SMART366389LRR_typ_2
IPR003591SMART732756LRR_typ_2
IPR003591SMART117142LRR_typ_2
IPR003591SMART491514LRR_typ_2
IPR003591SMART223246LRR_typ_2
IPR003591SMART942975LRR_typ_2
IPR003591SMART294318LRR_typ_2
IPR003591SMART894918LRR_typ_2
IPR032675Gene3D38174Ribonuclease Inhibitor
IPR001611Pfam344403Leucine rich repeat
IPR001611Pfam759818Leucine rich repeat
IPR001611Pfam493553Leucine rich repeat
-SUPERFAMILY384629RNI-like
-PRINTS494507Leucine-rich repeat signature
-PRINTS805818Leucine-rich repeat signature
-PANTHER336507LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
-PANTHER32335LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
-PANTHER4941045LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
IPR013210Pfam3774Leucine rich repeat N-terminal domain
IPR032675Gene3D176533Ribonuclease Inhibitor
IPR032675Gene3D534990Ribonuclease Inhibitor
-SUPERFAMILY107438RNI-like

Gene Structure

Blastn Searches(aligned nr database from NCBI)

Accession(nr database) %Identity Length E-value
NullNullNullNull