Data Related Infomation
Camellia sinensis var. sinensis cv. Tieguanyin GWHPASIV004425 FAFU Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | Paired amphipathic helix |
| Locus Name: | GWHPASIV004425 |
Gene Family
Sin3a_C
Gene Attributes
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| ProSiteProfiles | Paired amphipathic helix | 183 | 253 | GO:0006355 |
| ProSiteProfiles | Paired amphipathic helix | 387 | 456 | GO:0006355 |
| ProSiteProfiles | Paired amphipathic helix | 98 | 168 | GO:0006355 |
| Gene3D | Paired amphipathic helix superfamily | 384 | 457 | GO:0006355 |
| SUPERFAMILY | Paired amphipathic helix superfamily | 96 | 167 | GO:0006355 |
| SUPERFAMILY | Paired amphipathic helix superfamily | 390 | 454 | GO:0006355 |
| SUPERFAMILY | Paired amphipathic helix superfamily | 180 | 252 | GO:0006355 |
| Pfam | Paired amphipathic helix | 121 | 165 | GO:0006355 |
| Pfam | Paired amphipathic helix | 409 | 453 | GO:0006355 |
| Pfam | Paired amphipathic helix | 206 | 250 | GO:0006355 |
| PANTHER | Transcriptional regulatory protein Sin3-like | 31 | 1420 | GO:0003714 |
| Gene3D | Paired amphipathic helix superfamily | 104 | 166 | GO:0006355 |
| Gene3D | Paired amphipathic helix superfamily | 180 | 253 | GO:0006355 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Annotation | Match Start | Match End | E-value |
|---|---|---|---|---|
| PF16879 | C-terminal domain of Sin3a protein | 1153 | 1401 | 1e-5 |
| PF02671 | Paired amphipathic helix repeat | 121 | 165 | 1e-5 |
| PF02671 | Paired amphipathic helix repeat | 409 | 453 | 1e-5 |
| PF02671 | Paired amphipathic helix repeat | 206 | 250 | 1e-5 |
| PF08295 | Sin3 family co-repressor | 523 | 614 | 1e-5 |
Interpro hits
| Interpro Accession | Database | Match Start | Match End | Annotation |
|---|---|---|---|---|
| - | Coils | 312 | 339 | Coil |
| - | MobiDBLite | 1026 | 1040 | consensus disorder prediction |
| - | MobiDBLite | 984 | 1002 | consensus disorder prediction |
| - | MobiDBLite | 798 | 875 | consensus disorder prediction |
| - | MobiDBLite | 297 | 349 | consensus disorder prediction |
| - | MobiDBLite | 44 | 58 | consensus disorder prediction |
| IPR013194 | SMART | 521 | 621 | hdac_interact2seq4b |
| - | MobiDBLite | 925 | 947 | consensus disorder prediction |
| - | MobiDBLite | 1051 | 1067 | consensus disorder prediction |
| IPR003822 | ProSiteProfiles | 183 | 253 | PAH domain profile. |
| - | PANTHER | 31 | 1420 | PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 |
| IPR003822 | ProSiteProfiles | 387 | 456 | PAH domain profile. |
| IPR003822 | ProSiteProfiles | 98 | 168 | PAH domain profile. |
| IPR036600 | Gene3D | 384 | 457 | PAH2 domain |
| - | MobiDBLite | 1080 | 1101 | consensus disorder prediction |
| IPR031693 | Pfam | 1153 | 1401 | C-terminal domain of Sin3a protein |
| - | MobiDBLite | 840 | 871 | consensus disorder prediction |
| IPR036600 | SUPERFAMILY | 96 | 167 | PAH2 domain |
| IPR036600 | SUPERFAMILY | 390 | 454 | PAH2 domain |
| IPR036600 | SUPERFAMILY | 180 | 252 | PAH2 domain |
| - | MobiDBLite | 42 | 72 | consensus disorder prediction |
| IPR003822 | Pfam | 121 | 165 | Paired amphipathic helix repeat |
| IPR003822 | Pfam | 409 | 453 | Paired amphipathic helix repeat |
| IPR003822 | Pfam | 206 | 250 | Paired amphipathic helix repeat |
| IPR039774 | PANTHER | 31 | 1420 | SIN3B-RELATED |
| - | MobiDBLite | 984 | 1116 | consensus disorder prediction |
| IPR013194 | Pfam | 523 | 614 | Sin3 family co-repressor |
| - | MobiDBLite | 802 | 816 | consensus disorder prediction |
| IPR036600 | Gene3D | 104 | 166 | PAH2 domain |
| IPR036600 | Gene3D | 180 | 253 | PAH2 domain |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| Null | Null | Null | Null |