Data Related Infomation
Camellia sinensis var. sinensis cv. Tieguanyin GWHPASIV028708 FAFU Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
Gene Product Name: | Polyketide synthase, type III |
Locus Name: | GWHPASIV028708 |
KEGG Orthology
Gene Family
Chal_sti_synt_N
Gene Attributes
Gene Ontology Classification
Database | Annotation | Match Start | Match End | GO |
---|---|---|---|---|
PANTHER | Polyketide synthase, type III | 2 | 388 | GO:0009058|GO:0016747 |
SUPERFAMILY | Thiolase-like | 235 | 386 | GO:0016746 |
Gene3D | Thiolase-like | 236 | 389 | GO:0016746 |
ProSitePatterns | Chalcone/stilbene synthase, active site | 156 | 172 | GO:0009058|GO:0016746 |
Gene3D | Thiolase-like | 1 | 235 | GO:0016746 |
PIRSF | Polyketide synthase, type III | 2 | 389 | GO:0009058|GO:0016747 |
SUPERFAMILY | Thiolase-like | 1 | 233 | GO:0016746 |
Signal Peptide
No Signal Peptide Found
PFAM hits
Accession | Annotation | Match Start | Match End | E-value |
---|---|---|---|---|
PF00195 | Chalcone and stilbene synthases, N-terminal domain | 5 | 228 | 1e-5 |
PF02797 | Chalcone and stilbene synthases, C-terminal domain | 238 | 387 | 1e-5 |
Interpro hits
Interpro Accession | Database | Match Start | Match End | Annotation |
---|---|---|---|---|
IPR011141 | PANTHER | 2 | 388 | HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
IPR016039 | SUPERFAMILY | 235 | 386 | Thiolase-like |
IPR001099 | Pfam | 5 | 228 | Chalcone and stilbene synthases, N-terminal domain |
IPR016039 | Gene3D | 236 | 389 | - |
IPR012328 | Pfam | 238 | 387 | Chalcone and stilbene synthases, C-terminal domain |
IPR018088 | ProSitePatterns | 156 | 172 | Chalcone and stilbene synthases active site. |
IPR016039 | Gene3D | 1 | 235 | - |
IPR011141 | PIRSF | 2 | 389 | PKS_III |
- | PANTHER | 2 | 388 | CHALCONE SYNTHASE 2 |
IPR016039 | SUPERFAMILY | 1 | 233 | Thiolase-like |
- | CDD | 16 | 384 | CHS_like |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
Accession(nr database) | %Identity | Length | E-value |
---|---|---|---|
Null | Null | Null | Null |