Data Related Infomation
Camellia sinensis var. sinensis cv. Tieguanyin GWHPASIV018195 FAFU Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
Gene Product Name: | Paired amphipathic helix superfamily |
Locus Name: | GWHPASIV018195 |
Gene Family
PAH
Gene Attributes
Gene Ontology Classification
Database | Annotation | Match Start | Match End | GO |
---|---|---|---|---|
Gene3D | Paired amphipathic helix superfamily | 84 | 157 | GO:0006355 |
Gene3D | Paired amphipathic helix superfamily | 14 | 70 | GO:0006355 |
SUPERFAMILY | Paired amphipathic helix superfamily | 85 | 156 | GO:0006355 |
Pfam | Paired amphipathic helix | 25 | 69 | GO:0006355 |
Pfam | Paired amphipathic helix | 110 | 154 | GO:0006355 |
SUPERFAMILY | Paired amphipathic helix superfamily | 14 | 71 | GO:0006355 |
ProSiteProfiles | Paired amphipathic helix | 85 | 157 | GO:0006355 |
Pfam | XS domain | 199 | 245 | GO:0031047 |
ProSiteProfiles | Paired amphipathic helix | 3 | 72 | GO:0006355 |
PANTHER | Transcriptional regulatory protein Sin3-like | 15 | 196 | GO:0003714 |
Signal Peptide
No Signal Peptide Found
PFAM hits
Accession | Annotation | Match Start | Match End | E-value |
---|---|---|---|---|
PF02671 | Paired amphipathic helix repeat | 25 | 69 | 1e-5 |
PF02671 | Paired amphipathic helix repeat | 110 | 154 | 1e-5 |
PF03468 | XS domain | 199 | 245 | 1e-5 |
Interpro hits
Interpro Accession | Database | Match Start | Match End | Annotation |
---|---|---|---|---|
IPR036600 | Gene3D | 84 | 157 | PAH2 domain |
IPR036600 | Gene3D | 14 | 70 | PAH2 domain |
IPR036600 | SUPERFAMILY | 85 | 156 | PAH2 domain |
- | PANTHER | 15 | 196 | HISTONE DEACETYLASE INTERACTING DOMAIN, SIN3-RELATED |
IPR003822 | Pfam | 25 | 69 | Paired amphipathic helix repeat |
IPR003822 | Pfam | 110 | 154 | Paired amphipathic helix repeat |
IPR036600 | SUPERFAMILY | 14 | 71 | PAH2 domain |
IPR003822 | ProSiteProfiles | 85 | 157 | PAH domain profile. |
IPR005380 | Pfam | 199 | 245 | XS domain |
IPR038588 | Gene3D | 178 | 250 | - |
IPR003822 | ProSiteProfiles | 3 | 72 | PAH domain profile. |
IPR039774 | PANTHER | 15 | 196 | SIN3B-RELATED |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
Accession(nr database) | %Identity | Length | E-value |
---|---|---|---|
Null | Null | Null | Null |