Data Related Infomation
Camellia sinensis var. sinensis cv. Tieguanyin GWHPASIV018576 FAFU Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
| Gene Product Name: | Transcriptional regulatory protein Sin3-like |
| Locus Name: | GWHPASIV018576 |
Gene Family
Sin3a_C
Gene Attributes
Gene Ontology Classification
| Database | Annotation | Match Start | Match End | GO |
|---|---|---|---|---|
| PANTHER | Transcriptional regulatory protein Sin3-like | 1 | 1419 | GO:0003714 |
| ProSiteProfiles | Paired amphipathic helix | 38 | 108 | GO:0006355 |
| SUPERFAMILY | Paired amphipathic helix superfamily | 121 | 193 | GO:0006355 |
| Gene3D | Paired amphipathic helix superfamily | 44 | 106 | GO:0006355 |
| ProSiteProfiles | Paired amphipathic helix | 338 | 404 | GO:0006355 |
| Pfam | Paired amphipathic helix | 61 | 105 | GO:0006355 |
| Pfam | Paired amphipathic helix | 148 | 191 | GO:0006355 |
| Pfam | Paired amphipathic helix | 357 | 401 | GO:0006355 |
| Gene3D | Paired amphipathic helix superfamily | 336 | 405 | GO:0006355 |
| SUPERFAMILY | Paired amphipathic helix superfamily | 37 | 107 | GO:0006355 |
| ProSiteProfiles | Paired amphipathic helix | 124 | 194 | GO:0006355 |
| SUPERFAMILY | Paired amphipathic helix superfamily | 339 | 401 | GO:0006355 |
| Gene3D | Paired amphipathic helix superfamily | 121 | 194 | GO:0006355 |
Signal Peptide
No Signal Peptide Found
PFAM hits
| Accession | Annotation | Match Start | Match End | E-value |
|---|---|---|---|---|
| PF08295 | Sin3 family co-repressor | 497 | 589 | 1e-5 |
| PF16879 | C-terminal domain of Sin3a protein | 1150 | 1398 | 1e-5 |
| PF02671 | Paired amphipathic helix repeat | 61 | 105 | 1e-5 |
| PF02671 | Paired amphipathic helix repeat | 148 | 191 | 1e-5 |
| PF02671 | Paired amphipathic helix repeat | 357 | 401 | 1e-5 |
Interpro hits
| Interpro Accession | Database | Match Start | Match End | Annotation |
|---|---|---|---|---|
| IPR013194 | SMART | 495 | 595 | hdac_interact2seq4b |
| - | PANTHER | 1 | 1419 | PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 |
| IPR039774 | PANTHER | 1 | 1419 | SIN3B-RELATED |
| - | MobiDBLite | 252 | 330 | consensus disorder prediction |
| - | MobiDBLite | 882 | 903 | consensus disorder prediction |
| IPR003822 | ProSiteProfiles | 38 | 108 | PAH domain profile. |
| IPR036600 | SUPERFAMILY | 121 | 193 | PAH2 domain |
| IPR036600 | Gene3D | 44 | 106 | PAH2 domain |
| - | MobiDBLite | 14 | 36 | consensus disorder prediction |
| IPR003822 | ProSiteProfiles | 338 | 404 | PAH domain profile. |
| IPR013194 | Pfam | 497 | 589 | Sin3 family co-repressor |
| IPR031693 | Pfam | 1150 | 1398 | C-terminal domain of Sin3a protein |
| IPR003822 | Pfam | 61 | 105 | Paired amphipathic helix repeat |
| IPR003822 | Pfam | 148 | 191 | Paired amphipathic helix repeat |
| IPR003822 | Pfam | 357 | 401 | Paired amphipathic helix repeat |
| IPR036600 | Gene3D | 336 | 405 | PAH2 domain |
| - | MobiDBLite | 427 | 465 | consensus disorder prediction |
| - | MobiDBLite | 1091 | 1112 | consensus disorder prediction |
| - | MobiDBLite | 976 | 1115 | consensus disorder prediction |
| - | MobiDBLite | 794 | 855 | consensus disorder prediction |
| IPR036600 | SUPERFAMILY | 37 | 107 | PAH2 domain |
| IPR003822 | ProSiteProfiles | 124 | 194 | PAH domain profile. |
| - | MobiDBLite | 794 | 841 | consensus disorder prediction |
| IPR036600 | SUPERFAMILY | 339 | 401 | PAH2 domain |
| - | MobiDBLite | 252 | 314 | consensus disorder prediction |
| - | Coils | 564 | 588 | Coil |
| IPR036600 | Gene3D | 121 | 194 | PAH2 domain |
| - | MobiDBLite | 432 | 463 | consensus disorder prediction |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
| Accession(nr database) | %Identity | Length | E-value |
|---|---|---|---|
| Null | Null | Null | Null |