Data Related Infomation
Camellia sinensis var. sinensis cv. Tieguanyin GWHPASIV018912 FAFU Release 1 Annotation
DNA Coding Sequence & Protein Sequence
Gene Identification
Gene Product Name: | Paired amphipathic helix superfamily |
Locus Name: | GWHPASIV018912 |
Gene Family
PAH
Gene Attributes
Gene Ontology Classification
Database | Annotation | Match Start | Match End | GO |
---|---|---|---|---|
Gene3D | Paired amphipathic helix superfamily | 146 | 219 | GO:0006355 |
Pfam | Paired amphipathic helix | 87 | 131 | GO:0006355 |
Pfam | Paired amphipathic helix | 172 | 216 | GO:0006355 |
Gene3D | Paired amphipathic helix superfamily | 70 | 131 | GO:0006355 |
SUPERFAMILY | Paired amphipathic helix superfamily | 62 | 132 | GO:0006355 |
ProSiteProfiles | Paired amphipathic helix | 64 | 134 | GO:0006355 |
ProSiteProfiles | Paired amphipathic helix | 149 | 219 | GO:0006355 |
SUPERFAMILY | Paired amphipathic helix superfamily | 146 | 218 | GO:0006355 |
PANTHER | Transcriptional regulatory protein Sin3-like | 25 | 301 | GO:0003714 |
Signal Peptide
No Signal Peptide Found
PFAM hits
Accession | Annotation | Match Start | Match End | E-value |
---|---|---|---|---|
PF02671 | Paired amphipathic helix repeat | 87 | 131 | 1e-5 |
PF02671 | Paired amphipathic helix repeat | 172 | 216 | 1e-5 |
Interpro hits
Interpro Accession | Database | Match Start | Match End | Annotation |
---|---|---|---|---|
IPR036600 | Gene3D | 146 | 219 | PAH2 domain |
- | MobiDBLite | 373 | 392 | consensus disorder prediction |
IPR003822 | Pfam | 87 | 131 | Paired amphipathic helix repeat |
IPR003822 | Pfam | 172 | 216 | Paired amphipathic helix repeat |
- | PANTHER | 25 | 301 | HISTONE DEACETYLASE INTERACTING DOMAIN, SIN3-RELATED |
IPR036600 | Gene3D | 70 | 131 | PAH2 domain |
IPR036600 | SUPERFAMILY | 62 | 132 | PAH2 domain |
IPR003822 | ProSiteProfiles | 64 | 134 | PAH domain profile. |
IPR003822 | ProSiteProfiles | 149 | 219 | PAH domain profile. |
IPR036600 | SUPERFAMILY | 146 | 218 | PAH2 domain |
IPR039774 | PANTHER | 25 | 301 | SIN3B-RELATED |
Gene Structure
Blastn Searches(aligned nr database from NCBI)
Accession(nr database) | %Identity | Length | E-value |
---|---|---|---|
Null | Null | Null | Null |