Data Related Infomation

Camellia sinensis var. sinensis cv. Tieguanyin                  GWHPASIV034383                   FAFU Release 1 Annotation

DNA Coding Sequence & Protein Sequence

Click here download sequences in FASTA format.

Gene Identification

Gene Product Name:   Leucine-rich repeat
Locus Name:   GWHPASIV034383

KEGG Orthology

K13466  K13420  K13465  K13468  K13471  K13416  K13470  K13446  K13428  K13437  K08844  K12796  K16340  K08399  K19613  K17256  K13459  K04306  K16224  K08462  K24055  K10159  K13415  K13457  K06839  K20718  K04308  K06838  K06555  K18809  K18808  K18807  K14142  K13418  K20599  K04309  K23533  K08123  K05401  K08119  K13023  K20359  K06260  K04307  K08120  K08460  K06850  K08118  K17550  K13417  K10130  K16362  K24500  K10160  K08843  K24492  K10348  K16351  K16665  K04247  K08461  K22038  K20230  K06261  K10641  K16358  K10169  K13460  K20237  K10168  K08121  K00924  K08130  K16360  K17568  K16661  K08127  K15069  K22529  K04985  K08128  K24095  K24493  K08124  K16666  K16355  K16606  K16354  K08125  K16356  K16659  K04249  K10171  K14050  K16357  K19750  K18647  K10270  K16660  K23946  K22449  K12805  K20493  K24491  K14319  K16717  K03021  K10411  K14485  K16226  K18648  K14284  K17579  K17567  K13453  

Gene Family

LRR_8

Gene Attributes

No Gene Attributes Found

Gene Ontology Classification

Database Annotation Match Start Match End GO
PfamLeucine-rich repeat413473GO:0005515
PfamLeucine-rich repeat270328GO:0005515
PfamLeucine-rich repeat539599GO:0005515
PfamLeucine-rich repeat246268GO:0005515
PfamLeucine-rich repeat950966GO:0005515
PfamLeucine-rich repeat788808GO:0005515
PfamLeucine-rich repeat860882GO:0005515

Signal Peptide

No Signal Peptide Found

PFAM hits

Accession Annotation Match Start Match End E-value
PF08263Leucine rich repeat N-terminal domain34721e-5
PF13855Leucine rich repeat4134731e-5
PF13855Leucine rich repeat2703281e-5
PF13855Leucine rich repeat5395991e-5
PF00560Leucine Rich Repeat2462681e-5
PF00560Leucine Rich Repeat9509661e-5
PF00560Leucine Rich Repeat7888081e-5
PF00560Leucine Rich Repeat8608821e-5

Interpro hits

Interpro Accession Database Match Start Match End Annotation
IPR003591SMART460483LRR_typ_2
IPR003591SMART244267LRR_typ_2
IPR003591SMART785808LRR_typ_2
IPR003591SMART947971LRR_typ_2
IPR003591SMART537561LRR_typ_2
IPR003591SMART113138LRR_typ_2
IPR003591SMART219242LRR_typ_2
IPR003591SMART388412LRR_typ_2
IPR003591SMART9951018LRR_typ_2
IPR003591SMART340364LRR_typ_2
IPR003591SMART292316LRR_typ_2
IPR003591SMART858882LRR_typ_2
-SMART513534LRR_sd22_2
-SMART292311LRR_sd22_2
-SMART436465LRR_sd22_2
-SMART537563LRR_sd22_2
-SMART586605LRR_sd22_2
-SMART858884LRR_sd22_2
-SUPERFAMILY357676RNI-like
-PANTHER5391100LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
-PANTHER383553LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
IPR032675Gene3D5811043Ribonuclease Inhibitor
IPR032675Gene3D514580Ribonuclease Inhibitor
-PANTHER339383LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
-PANTHER31333LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
-SUPERFAMILY6991033L domain-like
-SUPERFAMILY105375RNI-like
IPR013210Pfam3472Leucine rich repeat N-terminal domain
-PANTHER339383LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
-PANTHER5391100LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
IPR032675Gene3D211308Ribonuclease Inhibitor
IPR032675Gene3D27210Ribonuclease Inhibitor
IPR032675Gene3D309405Ribonuclease Inhibitor
-PRINTS295308Leucine-rich repeat signature
-PRINTS537550Leucine-rich repeat signature
-PANTHER31333LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
IPR032675Gene3D406510Ribonuclease Inhibitor
IPR001611Pfam413473Leucine rich repeat
IPR001611Pfam270328Leucine rich repeat
IPR001611Pfam539599Leucine rich repeat
IPR001611Pfam246268Leucine Rich Repeat
IPR001611Pfam950966Leucine Rich Repeat
IPR001611Pfam788808Leucine Rich Repeat
IPR001611Pfam860882Leucine Rich Repeat
-PANTHER383553LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2

Gene Structure

Blastn Searches(aligned nr database from NCBI)

Accession(nr database) %Identity Length E-value
NullNullNullNull