Data Related Infomation

Camellia sinensis var. sinensis cv. Tieguanyin                  GWHPASIV037551                   FAFU Release 1 Annotation

DNA Coding Sequence & Protein Sequence

Click here download sequences in FASTA format.

Gene Identification

Gene Product Name:   Leucine-rich repeat
Locus Name:   GWHPASIV037551

KEGG Orthology

K13466  K13420  K13465  K13468  K13471  K13470  K13416  K13446  K13428  K13437  K08844  K12796  K16340  K19613  K13459  K20718  K13415  K08399  K17256  K16224  K04306  K10159  K13457  K13023  K04308  K13418  K05401  K08462  K06555  K18808  K13730  K24055  K04309  K20599  K06838  K06839  K18807  K23533  K18809  K14142  K20359  K17550  K08123  K13417  K06260  K10348  K08120  K22038  K24492  K10641  K08119  K04307  K06850  K10160  K20237  K16351  K08843  K00924  K10130  K08460  K16665  K20230  K10168  K08121  K22615  K24500  K16362  K06261  K12800  K04247  K10169  K08130  K16360  K08118  K15069  K10268  K18647  K22529  K13460  K16358  K17576  K16355  K20865  K08124  K10171  K08461  K24493  K08127  K14050  K24095  K22449  K16356  K16661  K16354  K10350  K16606  K16357  K16770  K08125  K23946  K18648  K10270  K24491  K08128  K10273  K14319  K16666  K10280  K16226  K12805  K04249  K16660  K15353  K20493  K04985  K17579  K16717  K16659  K14284  K03021  K19999  K12807  K19750  K04360  K10271  K19753  K22614  

Gene Family

LRR_8

Gene Attributes

No Gene Attributes Found

Gene Ontology Classification

Database Annotation Match Start Match End GO
PfamLeucine-rich repeat576591GO:0005515
PfamLeucine-rich repeat727749GO:0005515
PfamLeucine-rich repeat407467GO:0005515
PfamLeucine-rich repeat817875GO:0005515

Signal Peptide

No Signal Peptide Found

PFAM hits

Accession Annotation Match Start Match End E-value
PF13516Leucine Rich repeat5765911e-5
PF00560Leucine Rich Repeat7277491e-5
PF08263Leucine rich repeat N-terminal domain38751e-5
PF13855Leucine rich repeat4074671e-5
PF13855Leucine rich repeat8178751e-5

Interpro hits

Interpro Accession Database Match Start Match End Annotation
-ProSiteProfiles135Prokaryotic membrane lipoprotein lipid attachment site profile.
IPR001611Pfam576591Leucine Rich repeat
IPR001611Pfam727749Leucine Rich Repeat
-PANTHER32972LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
IPR032675Gene3D209372Ribonuclease Inhibitor
-PANTHER32972LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
-PRINTS579592Leucine-rich repeat signature
-PRINTS725738Leucine-rich repeat signature
-SUPERFAMILY87323RNI-like
IPR013210Pfam3875Leucine rich repeat N-terminal domain
-SMART790809LRR_sd22_2
-SMART429456LRR_sd22_2
-SMART838864LRR_sd22_2
-SMART405424LRR_sd22_2
-SMART725751LRR_sd22_2
-SUPERFAMILY250598RNI-like
IPR032675Gene3D373554Ribonuclease Inhibitor
IPR032675Gene3D555910Ribonuclease Inhibitor
IPR032675Gene3D30208Ribonuclease Inhibitor
-SUPERFAMILY519889RNI-like
IPR003591SMART790814LRR_typ_2
IPR003591SMART838862LRR_typ_2
IPR003591SMART233256LRR_typ_2
IPR003591SMART281305LRR_typ_2
IPR003591SMART209232LRR_typ_2
IPR003591SMART133156LRR_typ_2
IPR003591SMART429453LRR_typ_2
IPR003591SMART405428LRR_typ_2
IPR003591SMART725749LRR_typ_2
IPR001611Pfam407467Leucine rich repeat
IPR001611Pfam817875Leucine rich repeat

Gene Structure

Blastn Searches(aligned nr database from NCBI)

Accession(nr database) %Identity Length E-value
NullNullNullNull