Data Related Infomation

Camellia sinensis var. sinensis cv. Tieguanyin                  GWHPASIV037554                   FAFU Release 1 Annotation

DNA Coding Sequence & Protein Sequence

Click here download sequences in FASTA format.

Gene Identification

Gene Product Name:   Leucine-rich repeat
Locus Name:   GWHPASIV037554

KEGG Orthology

K13466  K13420  K13465  K13468  K13471  K13416  K13470  K13428  K13446  K13437  K08844  K12796  K20718  K16340  K19613  K13459  K08399  K13415  K17256  K04306  K16224  K13457  K18808  K10159  K04308  K24055  K05401  K13418  K14142  K08462  K17550  K06839  K20599  K06555  K13023  K06838  K20359  K23533  K04309  K08123  K18807  K13417  K24492  K08119  K10348  K16665  K18809  K06850  K08120  K10160  K04307  K00924  K10641  K10168  K06260  K10130  K08121  K04247  K08843  K20230  K16351  K08460  K20237  K16355  K08118  K16358  K22529  K06261  K16362  K22038  K24500  K17576  K08124  K13460  K16356  K10169  K16357  K08461  K22449  K16354  K14050  K16360  K16661  K18647  K10278  K24095  K10171  K10350  K15069  K24493  K15353  K16666  K17568  K08128  K14319  K12805  K04985  K08130  K20493  K16606  K11092  K16717  K08125  K16226  K24491  K12807  K17579  K16770  K16659  K16660  K23831  K19750  K21824  K18648  K10411  K03021  K04249  K04360  K19753  K10314  K17567  K18646  

Gene Family

LRR_8

Gene Attributes

No Gene Attributes Found

Gene Ontology Classification

Database Annotation Match Start Match End GO
PfamLeucine-rich repeat380440GO:0005515
PfamLeucine-rich repeat787845GO:0005515
PfamLeucine-rich repeat119176GO:0005515

Signal Peptide

No Signal Peptide Found

PFAM hits

Accession Annotation Match Start Match End E-value
PF08263Leucine rich repeat N-terminal domain38751e-5
PF13855Leucine rich repeat3804401e-5
PF13855Leucine rich repeat7878451e-5
PF13855Leucine rich repeat1191761e-5

Interpro hits

Interpro Accession Database Match Start Match End Annotation
-PANTHER32214LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
IPR032675Gene3D210323Ribonuclease Inhibitor
IPR032675Gene3D30209Ribonuclease Inhibitor
-ProSiteProfiles135Prokaryotic membrane lipoprotein lipid attachment site profile.
-SUPERFAMILY75268RNI-like
-PANTHER380890LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
-PANTHER221392LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
-SMART402429LRR_sd22_2
-SMART808834LRR_sd22_2
-SMART378401LRR_sd22_2
-SMART760783LRR_sd22_2
-SMART695730LRR_sd22_2
-SUPERFAMILY530871L domain-like
IPR003591SMART141164LRR_typ_2
IPR003591SMART695719LRR_typ_2
IPR003591SMART808832LRR_typ_2
IPR003591SMART378401LRR_typ_2
IPR003591SMART402426LRR_typ_2
IPR003591SMART760784LRR_typ_2
IPR003591SMART230254LRR_typ_2
IPR013210Pfam3875Leucine rich repeat N-terminal domain
-PANTHER32214LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED
-SUPERFAMILY211516RNI-like
IPR032675Gene3D324528Ribonuclease Inhibitor
-PANTHER380890LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
-PANTHER221392LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2
IPR001611Pfam380440Leucine rich repeat
IPR001611Pfam787845Leucine rich repeat
IPR001611Pfam119176Leucine rich repeat
-PRINTS763776Leucine-rich repeat signature
-PRINTS808821Leucine-rich repeat signature

Gene Structure

Blastn Searches(aligned nr database from NCBI)

Accession(nr database) %Identity Length E-value
NullNullNullNull